Issue
Potential regulatory factors in the pathogenesis of ankylosing spondylitis
Corresponding Author(s) : Hongxi Liu
Cellular and Molecular Biology,
Vol. 66 No. 5: Issue 5
Abstract
Ankylosing spondylitis (AS) is a chronic rheumatic disease that mainly affects the spinal joints (vertebrae). Spondylitis means inflammation of the spine, and ankylosing spondylitis means that bones tend to fuse. The AS causes the vertebrae to swell in the spine. Therefore, based on protein interaction network analysis, we conducted in-depth research on the molecular mechanism of key regulatory factors in the AS disease process. We carried out a differential analysis of the expression of miRNAs in disease samples and miRNAs in normal samples. Protein network interaction analysis is performed according to a group of target genes regulated by significant differentially expressed miRNAs and clustered into an interaction module. In addition, enrichment analysis of functions and pathways was performed on these modular genes. Based on the predictive analysis of multidimensional regulators, we identified a range of regulatory factors that have potential regulatory effects on AS, such as endogenous genes and transcription factors. We obtained 20 differentially expressed miRNAs and 7082 target genes and clustered into 11 modules. Enrichment results showed that these modular genes are mainly involved in the functions and pathways of protein polyubiquitination, neutrophil activation involved in immune response, and Wnt signaling pathway. We revealed ten transcription factors (MYC, NFKB1, and TP53). After network connectivity analysis, we obtained 12 internal drive genes (UBE2D1, CCNF, and NEDD4). These core genes are thought to be potential regulators of AS. MYC is also considered to be a core factor that inhibits SART3 phosphorylation and plays a vital role in the immunological pathogenesis of AS. The combination of the above analysis results can provide a new idea for biologists and medical scientists to study the immune pathogenesis of AS and can provide a valuable reference for subsequent treatment options.
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- Ozgur A, Serdaroglu Beyazal M, Terzi S, Coskun ZO, Dursun E. Vestibular evoked myogenic potentials in patients with ankylosing spondylitis. Eur Arch Otorhinolaryngol 2016; 273: 2953-2957.
- Kotsis K, Voulgari PV, Drosos AA, Carvalho AF, Hyphantis T. Health-related quality of life in patients with ankylosing spondylitis: a comprehensive review. Expert Rev Pharmacoecon Outcomes Res 2014; 14: 857-872.
- Osman MS, Maksymowych WP. An update on the use of tumor necrosis factor-alpha inhibitors in the treatment of ankylosing spondylitis. Expert Rev Clin Immunol 2017; 13: 125-131.
- Quaden DH, De Winter LM, Somers V. Detection of novel diagnostic antibodies in ankylosing spondylitis: An overview. Autoimmun Rev 2016; 15: 820-832.
- Martindale J, Shukla R, Goodacre J. The impact of ankylosing spondylitis/axial spondyloarthritis on work productivity. Best Pract Res Clin Rheumatol 2015; 29: 512-523.
- Ersozlu-Bozkirli ED, Keskek SO, Bozkirli E, Yucel AE. The effect of infliximab on depressive symptoms in patients with ankylosing spondylitis. Acta Reumatol Port 2015; 40: 262-267.
- Vanaki N, Aslani S, Jamshidi A, Mahmoudi M. Role of the innate immune system in the pathogenesis of ankylosing spondylitis. BBiomed Pharmacother 2018; 105: 130-143.
- Koc A, Emre IE. Audiovestibular Manifestations in Patients with Ankylosing Spondylitis--A Case Report and Review of the Literature. J Int Adv Otol 2015; 11: 176-178.
- Rezus E, Cardoneanu A, Macovei L, Stamate G, Burlui A. The Link Between Quality of Life and Economic Issues in Ankylosing Spondylitis. Rev Med Chir Soc Med Nat Iasi 2016; 120: 777-781.
- Liu J, Lian Z, Xiao Y, Shi LL, Chai W, Wang Y. Analysis of clinical indexes and RUNX3, TBKBP1, PPARGC1B polymorphisms in Chinese Han patients with ankylosing spondylitis. Genet Test Mol Biomarkers 2015; 19: 37-43.
- Wang Y, Luo J, Wang X, Yang B, Cui L. MicroRNA-199a-5p Induced Autophagy and Inhibits the Pathogenesis of Ankylosing Spondylitis by Modulating the mTOR Signaling via Directly Targeting Ras Homolog Enriched in Brain (Rheb). Cell Physiol Biochem 2017; 42: 2481-2491.
- Smith JA. Update on ankylosing spondylitis: current concepts in pathogenesis. Curr Allergy Asthma Rep 2015; 15: 489-497.
- Kuo FC, Chiang KL, Kao YS. Structural damage and motion rhythm of the spine and hip during trunk lateral bending in ankylosing spondylitis patients with mild to moderate radiographic signs. Clinic Biomech 2019, 63: 112-118.
- Kasapoglu Aksoy M, Birtane M, Tastekin N, Ekuklu G. The Effectiveness of Structured Group Education on Ankylosing Spondylitis Patients. J Clin Rheumatol 2017; 23: 138-143.
- Kanwal A, Fazal S. Construction and analysis of protein-protein interaction network correlated with ankylosing spondylitis. Gene 2018; 638: 41-51.
- Zhang L, Zhang YJ, Chen J, Huang XL, Fang GS, Yang LJ, Duan Y, Wang J. The association of HLA-B27 and Klebsiella pneumoniae in ankylosing spondylitis: A systematic review. Microb Pathog 2018; 117: 49-54.
- Serdaroglu Beyazal M, Erdogan T, Turkyilmaz AK, Devrimsel G, Cure MC, Beyaz M, Sahin I. Relationship of serum osteoprotegerin with arterial stiffness, preclinical atherosclerosis, and disease activity in patients with ankylosing spondylitis. Clin Rheumatol 2016; 35: 2235-2241.
- Woodward LJ, Kam PC. Ankylosing spondylitis: recent developments and anesthetic implications. Anesthesia 2009; 64: 540-548.
- Chen L, Liu J, Yang J, Zhang Y, Liu Y. Combined Fascia Iliaca and Sciatic Nerve Block for Hip Surgery in the Presence of Severe Ankylosing Spondylitis: A Case-Based Literature Review. Reg Anesth Pain Med 2016; 41: 158-163.
- Verma I, Single-A, Krishan P. Endothelial progenitor cell biology in ankylosing spondylitis. Int J Rheum Dis 2015; 18: 336-340.
- Agrawal N, Agarwal K, Varshney A, Agrawal N, Dubey A. Is there common pathogenesis in aggressive periodontitis & ankylosing spondylitis in HLA-B27 patient? Med Hypotheses 2016; 90: 63-65.
- Rashid T, Wilson C, Ebringer A. Raised incidence of ankylosing spondylitis among Inuit populations could be due to high HLA-B27 association and starch consumption. Rheumatol Int 2015; 35: 945-951.
- Li J, Wang P, Xie Z, Yang R, Li Y, Wu X, Su H, Deng W, Wang S, Liu Z. Elevated TRAF4 expression impaired LPS-induced autophagy in mesenchymal stem cells from ankylosing spondylitis patients. Exp Mol Med 2017; 49: e343.
- Chen HX, Huang L, Yang L, Chen YT, Huang JM. Model-based method with nonlinear ultrasonic system identification for mechanical structural health assessment. Trans Emerge Telecommun Technol 2020; 1-15.
- Chen X, Xu Y, Meng L, Chen X, Yuan L, Cai Q, Shi W, Huang G. Non-parametric partial least squares-discriminant analysis model based on sum of ranking difference algorithm for tea grade identification using electronic tongue data. Sens Actuators B Chem 2020; 311:127924-127931.
- Guo T, Lin Q, Li X, Nie Y, Wang L, Shi L, Xu W, Hu T, Guo T, Luo F. Octacosanol Attenuates Inflammation in Both RAW264.7 Macrophages and a Mouse Model of Colitis. J Agri Food Chem 2017; 65(18): 3647-3658.
- Jiang X, Zhu B, Chevallier J, Xie R. Allocating provincial CO2 quotas for the Chinese national carbon program. Australian J Agri Res Econ 2018; 62(3): 457-479.
- Li W, Jia MX, Wang JH, Lu JL, Deng J, Tang JX, Liu, C. Association of MMP9-1562C/T and MMP13-77A/G Polymorphisms with Non-Small Cell Lung Cancer in Southern Chinese Population. Biomolecules 2019; 9(3): 107-119.
- Liang Y, Lin Q, Huang P, Wang Y, Li J, Zhang L, Cao J. Rice Bioactive Peptide Binding with TLR4 To Overcome H2O2-Induced Injury in Human Umbilical Vein Endothelial Cells through NF-kappa B Signaling. J Agri Food Chem 2018; 66(2): 440-448.
- Lou Y, Guo D, Zhang H, Song L. Effectiveness of mesenchymal stems cells cultured by hanging drop vs. conventional culturing on the repair of hypoxic-ischemic-damaged mouse brains, measured by stemness gene expression. Open Life Sci 2016; 11(1): 519-523.
- Lou Y, Shi J, Guo D, Qureshi AK, Song L. Function of PD-L1 in antitumor immunity of glioma cells. Saudi J Biol Sci 2017; 24(4): 803-807.
- Lou Y, Yang J, Wang L, Chen X, Xin X, Liu Y. The clinical efficacy study of treatment to Chiari malformation type I with syringomyelia under the minimally invasive surgery of resection of Submeningeal cerebellar Tonsillar Herniation and reconstruction of Cisterna magna. Saudi J Biol Sci 2019; 26(8): 1927-1931.
- Nie Y, Luo F, Lin Q. Dietary nutrition and gut microflora: A promising target for treating diseases. Trends Food Sci Technol 2018; 75: 72-80.
- Nie Y, Luo F, Wang L, Yang T, Shi L, Li X, Shen J, Xu W, Guo T, Lin Q. Anti-hyperlipidemic effect of rice bran polysaccharide and its potential mechanism in high-fat diet mice. Food Func 2017; 8(11): 4028-4041.
- Ren Y, Jiao X, Zhang L. Expression level of fibroblast growth factor 5 (FGF5) in the peripheral blood of primary hypertension and its clinical significance. Saudi J Biol Sci 2018; 25(3): 469-473.
- Wang L, Lin Q, Yang T, Liang Y, Nie Y, Luo Y, Shen J, Fu X, Tang Y, Luo F. Oryzanol Modifies High Fat Diet-Induced Obesity, Liver Gene Expression Profile, and Inflammation Response in Mice. J Agri Food Chem 2017; 65(38): 8374-8385.
- Zhang T, Wu X, Shaheen SM, Zhao Q, Liu X, Rinklebe J, Ren H. Ammonium nitrogen recovery from digestate by hydrothermal pretreatment followed by activated hydrochar sorption. Chem Eng J 2020; 379: 1-54.
- Zhu B, Pang R, Chevallier J, Wei YM, Vo DT. Including intangible costs into the cost-of-illness approach: a method refinement illustrated based on the PM2.5 economic burden in China. Europ J Health Econ 2019; 20(4): 501-511.
- Chen H, Chen Y, Yang L. Intelligent early structural health prognosis with nonlinear system identification for RFID signal analysis. Comput Commun 2020; 157: 150-161.
- Yang M, Abdalrahman H, Sonia U, Mohammed A, Vestine U, Wang M, Ebadi AG, Toughani M. The application of DNA molecular markers in the study of Codonopsis species genetic variation, a review. Cell Mol Biol 2020; 2: 23-30.
- He L, Fang H, Wang X, Wang Y, Ge H, Li C, Chen C, Wan Y, He H. The 100 most-cited articles in urological surgery: A bibliometric analysis. Int J Surg 2020; 75: 74-79.
- Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M. NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res 2013; 41: D991-D995.
- Gao X, Tang RX, Xie QN, Lin JY, Shi HL, Chen G, Li ZY. The clinical value of miR-193a-3p in non-small cell lung cancer and its potential molecular mechanism explored in silico using RNA-sequencing and microarray data.FEBS Open Bio 2018; 8: 94-109.
- Athanasios A, Charalampos V, Vasileios T, Ashraf GM. Protein-Protein Interaction (PPI) Network: Recent Advances in Drug Discovery. Curr Drug Metab 2017; 18: 5-10.
- Yu G, Wang LG, Han Y, He QY. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 2012; 16: 284-287.
- Han H, Cho JW, Lee S, Yun A, Kim H, Bae D, Yang S, Kim CY, Lee M, Kim E. TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions. Nucleic Acids Res 2018; 46: D380-D386.
- Zhang W, Ma J, Ideker T. Classifying tumors by supervised network propagation. Bioinformatics 2018; 34: i484-i493.
- Aydeniz A, Akaltun MS, Gur A, Gursoy S. Coexistence of polymyalgia rheumatica with ankylosing spondylitis: A case report. Agri 2018; 30: 35-37.
- Hammer GE, Turer EE, Taylor KE, Fang CJ, Advincula R, Oshima S, Barrera J, Huang EJ, Hou B, Malynn BA. Expression of A20 by dendritic cells preserves immune homeostasis and prevents colitis and spondyloarthritis. Nat Immunol 2011; 12: 1184-1193.
- Hrycaj P, Lacki JK. Antibodies to ubiquitin concerning Yersinia infection status in patients with ankylosing spondylitis. Clin Rheumatol 2003; 22: 33-36.
- Ma S, Wang DD, Ma CY, microRNA"96 promotes osteoblast differentiation and bone formation in ankylosing spondylitis mice through activating the Wnt signaling pathway by binding to SOST[J]. Journal of cellular biochemistry 2019; 120(9): 15429-15442.
- He C, Li D, Gao J, Inhibition of CXCR4 inhibits the proliferation and osteogenic potential of fibroblasts from ankylosing spondylitis via the Wnt/β"‘catenin pathway. Molecular medicine reports 2019; 19(4): 3237-3246.
- Corr M. Wnt signaling in ankylosing spondylitis. Clin Rheumatol 2014; 33: 759-762.
- Haynes KR, Pettit AR, Duan R, Tseng HW, Glant TT, Brown MA, Thomas GP. Excessive bone formation in a mouse model of ankylosing spondylitis is associated with decreases in Wnt pathway inhibitors. Arthritis Res Ther 2012; 14: R253-R264.
- Zou YC, Yang XW, Yuan SG, Zhang P, Ye YL, Li YK. Downregulation of dickkopf-1 enhances the proliferation and osteogenic potential of fibroblasts isolated from ankylosing spondylitis patients via the Wnt/beta-catenin signaling pathway in vitro. Connect Tissue Res 2016; 57: 200-211.
- Zhu ZQ, Tang JS, Cao XJ. Transcriptome network analysis reveals potential candidate genes for ankylosing spondylitis. Eur Rev Med Pharmacol Sci 2013; 17: 3178-3185.
- Zou YF, Wang F, Feng XL, Tao JH, Zhu JM, Pan FM, Su H. Association of NFKB1 -94ins/delATTG promoter polymorphism with susceptibility to autoimmune and inflammatory diseases: a meta-analysis. Tissue Antigens 2011; 77: 9-17.
- Hatipoglu OF, Yaykasli KO, Dogan M, Yaykasli E, Bender O, Yasar T, Tapan S, Gunduz M. NF-κB and MAPKs are involved in resistin caused ADAMTS-5 induction in Human Chondrocytes. Clin Invest Med 2015; 38(4): E248-E254.
- Yaykasli, K.O., Visfatin promotes a disintegrin and metalloproteinase with thrombospondin motifs-5 gene expression through p38 MAPK and NF-kappa B pathways in human chondrocytes. The FEBS Journal 2016; 283 (Supp. 1): 50-50.
- Wang Z, Han Y, Zhang Z, Jia C, Zhao Q, Song W, Chen T, Zhang Y, Wang X. Identification of genes and signaling pathways associated with the pathogenesis of juvenile spondyloarthritis. Mol Med Rep 2018; 18: 1263-1270.
- Bordbar M, Darvishzadeh R, Pazhouhandeh M, Kahrizi D. An overview of genome editing methods based on endonucleases. Modern Genetics J 2020; 15(2): 75-92.
- Zhao H, Wang D, Fu D, Predicting the potential ankylosing spondylitis-related genes utilizing bioinformatics approaches. Rheumat Int 2015, 35(6): 973-979.
References
Ozgur A, Serdaroglu Beyazal M, Terzi S, Coskun ZO, Dursun E. Vestibular evoked myogenic potentials in patients with ankylosing spondylitis. Eur Arch Otorhinolaryngol 2016; 273: 2953-2957.
Kotsis K, Voulgari PV, Drosos AA, Carvalho AF, Hyphantis T. Health-related quality of life in patients with ankylosing spondylitis: a comprehensive review. Expert Rev Pharmacoecon Outcomes Res 2014; 14: 857-872.
Osman MS, Maksymowych WP. An update on the use of tumor necrosis factor-alpha inhibitors in the treatment of ankylosing spondylitis. Expert Rev Clin Immunol 2017; 13: 125-131.
Quaden DH, De Winter LM, Somers V. Detection of novel diagnostic antibodies in ankylosing spondylitis: An overview. Autoimmun Rev 2016; 15: 820-832.
Martindale J, Shukla R, Goodacre J. The impact of ankylosing spondylitis/axial spondyloarthritis on work productivity. Best Pract Res Clin Rheumatol 2015; 29: 512-523.
Ersozlu-Bozkirli ED, Keskek SO, Bozkirli E, Yucel AE. The effect of infliximab on depressive symptoms in patients with ankylosing spondylitis. Acta Reumatol Port 2015; 40: 262-267.
Vanaki N, Aslani S, Jamshidi A, Mahmoudi M. Role of the innate immune system in the pathogenesis of ankylosing spondylitis. BBiomed Pharmacother 2018; 105: 130-143.
Koc A, Emre IE. Audiovestibular Manifestations in Patients with Ankylosing Spondylitis--A Case Report and Review of the Literature. J Int Adv Otol 2015; 11: 176-178.
Rezus E, Cardoneanu A, Macovei L, Stamate G, Burlui A. The Link Between Quality of Life and Economic Issues in Ankylosing Spondylitis. Rev Med Chir Soc Med Nat Iasi 2016; 120: 777-781.
Liu J, Lian Z, Xiao Y, Shi LL, Chai W, Wang Y. Analysis of clinical indexes and RUNX3, TBKBP1, PPARGC1B polymorphisms in Chinese Han patients with ankylosing spondylitis. Genet Test Mol Biomarkers 2015; 19: 37-43.
Wang Y, Luo J, Wang X, Yang B, Cui L. MicroRNA-199a-5p Induced Autophagy and Inhibits the Pathogenesis of Ankylosing Spondylitis by Modulating the mTOR Signaling via Directly Targeting Ras Homolog Enriched in Brain (Rheb). Cell Physiol Biochem 2017; 42: 2481-2491.
Smith JA. Update on ankylosing spondylitis: current concepts in pathogenesis. Curr Allergy Asthma Rep 2015; 15: 489-497.
Kuo FC, Chiang KL, Kao YS. Structural damage and motion rhythm of the spine and hip during trunk lateral bending in ankylosing spondylitis patients with mild to moderate radiographic signs. Clinic Biomech 2019, 63: 112-118.
Kasapoglu Aksoy M, Birtane M, Tastekin N, Ekuklu G. The Effectiveness of Structured Group Education on Ankylosing Spondylitis Patients. J Clin Rheumatol 2017; 23: 138-143.
Kanwal A, Fazal S. Construction and analysis of protein-protein interaction network correlated with ankylosing spondylitis. Gene 2018; 638: 41-51.
Zhang L, Zhang YJ, Chen J, Huang XL, Fang GS, Yang LJ, Duan Y, Wang J. The association of HLA-B27 and Klebsiella pneumoniae in ankylosing spondylitis: A systematic review. Microb Pathog 2018; 117: 49-54.
Serdaroglu Beyazal M, Erdogan T, Turkyilmaz AK, Devrimsel G, Cure MC, Beyaz M, Sahin I. Relationship of serum osteoprotegerin with arterial stiffness, preclinical atherosclerosis, and disease activity in patients with ankylosing spondylitis. Clin Rheumatol 2016; 35: 2235-2241.
Woodward LJ, Kam PC. Ankylosing spondylitis: recent developments and anesthetic implications. Anesthesia 2009; 64: 540-548.
Chen L, Liu J, Yang J, Zhang Y, Liu Y. Combined Fascia Iliaca and Sciatic Nerve Block for Hip Surgery in the Presence of Severe Ankylosing Spondylitis: A Case-Based Literature Review. Reg Anesth Pain Med 2016; 41: 158-163.
Verma I, Single-A, Krishan P. Endothelial progenitor cell biology in ankylosing spondylitis. Int J Rheum Dis 2015; 18: 336-340.
Agrawal N, Agarwal K, Varshney A, Agrawal N, Dubey A. Is there common pathogenesis in aggressive periodontitis & ankylosing spondylitis in HLA-B27 patient? Med Hypotheses 2016; 90: 63-65.
Rashid T, Wilson C, Ebringer A. Raised incidence of ankylosing spondylitis among Inuit populations could be due to high HLA-B27 association and starch consumption. Rheumatol Int 2015; 35: 945-951.
Li J, Wang P, Xie Z, Yang R, Li Y, Wu X, Su H, Deng W, Wang S, Liu Z. Elevated TRAF4 expression impaired LPS-induced autophagy in mesenchymal stem cells from ankylosing spondylitis patients. Exp Mol Med 2017; 49: e343.
Chen HX, Huang L, Yang L, Chen YT, Huang JM. Model-based method with nonlinear ultrasonic system identification for mechanical structural health assessment. Trans Emerge Telecommun Technol 2020; 1-15.
Chen X, Xu Y, Meng L, Chen X, Yuan L, Cai Q, Shi W, Huang G. Non-parametric partial least squares-discriminant analysis model based on sum of ranking difference algorithm for tea grade identification using electronic tongue data. Sens Actuators B Chem 2020; 311:127924-127931.
Guo T, Lin Q, Li X, Nie Y, Wang L, Shi L, Xu W, Hu T, Guo T, Luo F. Octacosanol Attenuates Inflammation in Both RAW264.7 Macrophages and a Mouse Model of Colitis. J Agri Food Chem 2017; 65(18): 3647-3658.
Jiang X, Zhu B, Chevallier J, Xie R. Allocating provincial CO2 quotas for the Chinese national carbon program. Australian J Agri Res Econ 2018; 62(3): 457-479.
Li W, Jia MX, Wang JH, Lu JL, Deng J, Tang JX, Liu, C. Association of MMP9-1562C/T and MMP13-77A/G Polymorphisms with Non-Small Cell Lung Cancer in Southern Chinese Population. Biomolecules 2019; 9(3): 107-119.
Liang Y, Lin Q, Huang P, Wang Y, Li J, Zhang L, Cao J. Rice Bioactive Peptide Binding with TLR4 To Overcome H2O2-Induced Injury in Human Umbilical Vein Endothelial Cells through NF-kappa B Signaling. J Agri Food Chem 2018; 66(2): 440-448.
Lou Y, Guo D, Zhang H, Song L. Effectiveness of mesenchymal stems cells cultured by hanging drop vs. conventional culturing on the repair of hypoxic-ischemic-damaged mouse brains, measured by stemness gene expression. Open Life Sci 2016; 11(1): 519-523.
Lou Y, Shi J, Guo D, Qureshi AK, Song L. Function of PD-L1 in antitumor immunity of glioma cells. Saudi J Biol Sci 2017; 24(4): 803-807.
Lou Y, Yang J, Wang L, Chen X, Xin X, Liu Y. The clinical efficacy study of treatment to Chiari malformation type I with syringomyelia under the minimally invasive surgery of resection of Submeningeal cerebellar Tonsillar Herniation and reconstruction of Cisterna magna. Saudi J Biol Sci 2019; 26(8): 1927-1931.
Nie Y, Luo F, Lin Q. Dietary nutrition and gut microflora: A promising target for treating diseases. Trends Food Sci Technol 2018; 75: 72-80.
Nie Y, Luo F, Wang L, Yang T, Shi L, Li X, Shen J, Xu W, Guo T, Lin Q. Anti-hyperlipidemic effect of rice bran polysaccharide and its potential mechanism in high-fat diet mice. Food Func 2017; 8(11): 4028-4041.
Ren Y, Jiao X, Zhang L. Expression level of fibroblast growth factor 5 (FGF5) in the peripheral blood of primary hypertension and its clinical significance. Saudi J Biol Sci 2018; 25(3): 469-473.
Wang L, Lin Q, Yang T, Liang Y, Nie Y, Luo Y, Shen J, Fu X, Tang Y, Luo F. Oryzanol Modifies High Fat Diet-Induced Obesity, Liver Gene Expression Profile, and Inflammation Response in Mice. J Agri Food Chem 2017; 65(38): 8374-8385.
Zhang T, Wu X, Shaheen SM, Zhao Q, Liu X, Rinklebe J, Ren H. Ammonium nitrogen recovery from digestate by hydrothermal pretreatment followed by activated hydrochar sorption. Chem Eng J 2020; 379: 1-54.
Zhu B, Pang R, Chevallier J, Wei YM, Vo DT. Including intangible costs into the cost-of-illness approach: a method refinement illustrated based on the PM2.5 economic burden in China. Europ J Health Econ 2019; 20(4): 501-511.
Chen H, Chen Y, Yang L. Intelligent early structural health prognosis with nonlinear system identification for RFID signal analysis. Comput Commun 2020; 157: 150-161.
Yang M, Abdalrahman H, Sonia U, Mohammed A, Vestine U, Wang M, Ebadi AG, Toughani M. The application of DNA molecular markers in the study of Codonopsis species genetic variation, a review. Cell Mol Biol 2020; 2: 23-30.
He L, Fang H, Wang X, Wang Y, Ge H, Li C, Chen C, Wan Y, He H. The 100 most-cited articles in urological surgery: A bibliometric analysis. Int J Surg 2020; 75: 74-79.
Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M. NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res 2013; 41: D991-D995.
Gao X, Tang RX, Xie QN, Lin JY, Shi HL, Chen G, Li ZY. The clinical value of miR-193a-3p in non-small cell lung cancer and its potential molecular mechanism explored in silico using RNA-sequencing and microarray data.FEBS Open Bio 2018; 8: 94-109.
Athanasios A, Charalampos V, Vasileios T, Ashraf GM. Protein-Protein Interaction (PPI) Network: Recent Advances in Drug Discovery. Curr Drug Metab 2017; 18: 5-10.
Yu G, Wang LG, Han Y, He QY. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 2012; 16: 284-287.
Han H, Cho JW, Lee S, Yun A, Kim H, Bae D, Yang S, Kim CY, Lee M, Kim E. TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions. Nucleic Acids Res 2018; 46: D380-D386.
Zhang W, Ma J, Ideker T. Classifying tumors by supervised network propagation. Bioinformatics 2018; 34: i484-i493.
Aydeniz A, Akaltun MS, Gur A, Gursoy S. Coexistence of polymyalgia rheumatica with ankylosing spondylitis: A case report. Agri 2018; 30: 35-37.
Hammer GE, Turer EE, Taylor KE, Fang CJ, Advincula R, Oshima S, Barrera J, Huang EJ, Hou B, Malynn BA. Expression of A20 by dendritic cells preserves immune homeostasis and prevents colitis and spondyloarthritis. Nat Immunol 2011; 12: 1184-1193.
Hrycaj P, Lacki JK. Antibodies to ubiquitin concerning Yersinia infection status in patients with ankylosing spondylitis. Clin Rheumatol 2003; 22: 33-36.
Ma S, Wang DD, Ma CY, microRNA"96 promotes osteoblast differentiation and bone formation in ankylosing spondylitis mice through activating the Wnt signaling pathway by binding to SOST[J]. Journal of cellular biochemistry 2019; 120(9): 15429-15442.
He C, Li D, Gao J, Inhibition of CXCR4 inhibits the proliferation and osteogenic potential of fibroblasts from ankylosing spondylitis via the Wnt/β"‘catenin pathway. Molecular medicine reports 2019; 19(4): 3237-3246.
Corr M. Wnt signaling in ankylosing spondylitis. Clin Rheumatol 2014; 33: 759-762.
Haynes KR, Pettit AR, Duan R, Tseng HW, Glant TT, Brown MA, Thomas GP. Excessive bone formation in a mouse model of ankylosing spondylitis is associated with decreases in Wnt pathway inhibitors. Arthritis Res Ther 2012; 14: R253-R264.
Zou YC, Yang XW, Yuan SG, Zhang P, Ye YL, Li YK. Downregulation of dickkopf-1 enhances the proliferation and osteogenic potential of fibroblasts isolated from ankylosing spondylitis patients via the Wnt/beta-catenin signaling pathway in vitro. Connect Tissue Res 2016; 57: 200-211.
Zhu ZQ, Tang JS, Cao XJ. Transcriptome network analysis reveals potential candidate genes for ankylosing spondylitis. Eur Rev Med Pharmacol Sci 2013; 17: 3178-3185.
Zou YF, Wang F, Feng XL, Tao JH, Zhu JM, Pan FM, Su H. Association of NFKB1 -94ins/delATTG promoter polymorphism with susceptibility to autoimmune and inflammatory diseases: a meta-analysis. Tissue Antigens 2011; 77: 9-17.
Hatipoglu OF, Yaykasli KO, Dogan M, Yaykasli E, Bender O, Yasar T, Tapan S, Gunduz M. NF-κB and MAPKs are involved in resistin caused ADAMTS-5 induction in Human Chondrocytes. Clin Invest Med 2015; 38(4): E248-E254.
Yaykasli, K.O., Visfatin promotes a disintegrin and metalloproteinase with thrombospondin motifs-5 gene expression through p38 MAPK and NF-kappa B pathways in human chondrocytes. The FEBS Journal 2016; 283 (Supp. 1): 50-50.
Wang Z, Han Y, Zhang Z, Jia C, Zhao Q, Song W, Chen T, Zhang Y, Wang X. Identification of genes and signaling pathways associated with the pathogenesis of juvenile spondyloarthritis. Mol Med Rep 2018; 18: 1263-1270.
Bordbar M, Darvishzadeh R, Pazhouhandeh M, Kahrizi D. An overview of genome editing methods based on endonucleases. Modern Genetics J 2020; 15(2): 75-92.
Zhao H, Wang D, Fu D, Predicting the potential ankylosing spondylitis-related genes utilizing bioinformatics approaches. Rheumat Int 2015, 35(6): 973-979.