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Chromosome location of ISSR markers and genes controlling seed germination under drought stress in wheat-barley disomic addition lines
Corresponding Author(s) : Mohsen Farshadfar
Cellular and Molecular Biology,
Vol. 66 No. 1: Issue 1
Abstract
Alien disomic addition lines are valuable genetic resources for breeding programs under wide hybridization. The present study was carried out to identify the chromosome location of ISSR markers and genes controlling seed germination under drought stress in wheat-barley disomic addition lines. Germination experiment was performed at 0, -4 bar and -8 bar levels in a completely randomized design with three replications. The Germination Index, Germination Percentage, Coefficient of Germination Velocity, Mean Germination Time, Mean Germination Daily, and Plantlet Growth Speed were measured. Based on karyotype analysis, the presence of addition chromosomes was confirmed. The IS10 (0.494) and IS15 (0.395) primers showed the greatest polymorphism among the addition lines. The primers amplified most parts of the chromosomes 2H, 3H, and 7H, indicating these ISSR primers are located on these chromosomes. It is also indicated that most of the genes responsible for the seed germination under drought stress are located on chromosomes 4H and 5H.
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- Ellis RP, Forster BP, Robinson D, Handley L, Gordon DC, Russell JR, et al. Wild barley: a source of genes for crop improvement in the 21st century? J Exp Bot. 2000;51(342):9-17.
- Guo P, Baum M, Grando S, Ceccarelli S, Bai G, Li R, et al. Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J exp bot. 2009;60(12):3531-44.
- Molnár-Láng M, Linc G, Szakács í‰. Wheat–barley hybridization: the last 40 years. Euphytica. 2014;195(3):315-29.
- Akladious S, Abbas S. Inter simple sequence repeat (ISSR) markers and some physiological attributes of barley (Hordeum Vulgare L.) genotypes to drought and potassium nutrition. J Anim Plant Sci. 2014;24:620-33.
- Bilgic H, Cho S, Garvin DF, Muehlbauer GJ. Mapping barley genes to chromosome arms by transcript profiling of wheat–barley ditelosomic chromosome addition lines. Genome. 2007;50(10):898-906.
- Molnár-Láng M, Kruppa K, Cseh A, Bucsi J, Linc G. Identification and phenotypic description of new wheat–six-rowed winter barley disomic additions. Genome. 2012;55(4):302-11.
- Kruse A. Hordeumí— Triticum hybrids. Hereditas. 1973;73(1):157-61.
- Fedak G, Jui PY. Chromosomes of Chinese Spring wheat carrying genes for crossability with Betzes barley. Can J Genet Cytol. 1982;24(2):227-33.
- Islam A, Shepherd K, Sparrow D, editors. Addition of individual barley chromosomes to wheat. Proceedings of the International Barley Genetics Symposium; 1976.
- Szakács í‰, Molnár-Láng M. Identification of new winter wheat–winter barley addition lines (6HS and 7H) using fluorescence in situ hybridization and the stability of the whole ‘Martonvásári 9 kr1'–‘Igri'addition set. Genome. 2010;53(1):35-44.
- Szakács í‰, Molnár-Láng M. Development and molecular cytogenetic identification of new winter wheat–winter barley (‘Martonvásári 9 kr1'–‘Igri') disomic addition lines. Genome. 2006;50(1):43-50.
- Cseh A, Kruppa K, Molnár I, Rakszegi M, Doležel J, Molnár-Láng M. Characterization of a new 4BS. 7HL wheat–barley translocation line using GISH, FISH, and SSR markers and its effect on the β-glucan content of wheat. Genome. 2011;54(10):795-804.
- Araus JL, Slafer GA, Royo C, Serret MD. Breeding for yield potential and stress adaptation in cereals. Critical Rev Plant Sci. 2008;27(6):377-412.
- Araus J, Bort J, Steduto P, Villegas D, Royo C. Breeding cereals for Mediterranean conditions: ecophysiological clues for biotechnology application. Annals of Appl Biol. 2003;142(2):129-41.
- Singh R, Mishra GP, Thakur AK, Singh SB. Molecular markers in plants. Molecular plant breeding: principle, method and application Studium Press LLC, Houston. 2008:35-78.
- Li G, McVetty PB, Quiros CF, Andersen S. SRAP molecular marker technology in plant science. Plant breeding from laboratories to fields. 2013:23-43.
- Hu T, Li H, Li D, Sun J, Fu J. Assessing genetic diversity of perennial ryegrass (Lolium perenne L.) from four continents by intersimple sequence repeat (ISSR) markers. Afr J Biotechnol. 2011;10(83):19365-74.
- Xia Y, Li R, Bai G, Siddique KH, Varshney RK, Baum M, et al. Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific reports. 2017;7(1):1-10.
- Liu X, Fan Y, Mak M, Babla M, Holford P, Wang F, et al. QTLs for stomatal and photosynthetic traits related to salinity tolerance in barley. BMC genomics. 2017;18(1):9.
- Wójcik-JagÅ‚a M, Fiust A, KoÅ›cielniak J, Rapacz M. Association mapping of drought tolerance-related traits in barley to complement a traditional biparental QTL mapping study. Theo appl genet. 2018;131(1):167-81.
- Guasmi F, Touil L, Feres K, Elfelah W, Triki T, Ferchichi A. Genetic diversity of Tunisian barley accessions based on microsatellite markers. Biotechnology. 2008;7(4):781-6.
- Allel D, Ben-Amar A, Lamine M, Abdelly C. Relationships and genetic structure of North African barley (Hordeum vulgare L.) germplasm revealed by morphological and molecular markers: Biogeographical considerations. South Afr J Bot. 2017;112:1-10.
- Dbira S, Al Hassan M, Gramazio P, Ferchichi A, Vicente O, Prohens J, et al. Variable levels of tolerance to water stress (drought) and associated biochemical markers in Tunisian barley landraces. Molecules. 2018;23(3):613.
- Levan A, Fredga K, Sandberg AA. Nomenclature for centromeric position on chromosomes. Hereditas. 1964;52(2):201-20.
- Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. 1987.
- Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, et al. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular breeding. 1996;2(3):225-38.
- Benech Arnold R, Fenner M, Edwards P. Changes in germinability, ABA content and ABA embryonic sensitivity in developing seeds of Sorghum bicolor (L.) Moench. induced by water stress during grain filling. New Phytologist. 1991;118(2):339-47.
- Orchard T. Estimating the parameters of plant seedling emergence. Seed sci technol. 1977.
- Esechie H. Interaction of salinity and temperature on the germination of sorghum. Journal of Agro Crop Sci. 1994;172(3):194-9.
- Kader M. A comparison of seed germination calculation formulae and the associated interpretation of resulting data. J Proceed of the Royal Society of New South Wales. 2005;138:65-75.
- Ranal MA, Santana DGd. How and why to measure the germination process? Brazilian J Bot. 2006;29(1):1-11.
- Tjio JH, Hagberg A. Cytological studies on some X-ray mutants of barley. 1951.
- Abou-Deif M, Rashed M, Sallam M, Mostafa E, Ramadan W. Characterization of twenty wheat varieties by ISSR markers. Middle-East J Sci Res. 2013;15(2):168-75.
- AL-Tamimi AJ, AL-Janabi A. Genetic diversity among bread wheat genotypes using RAPD and SSR markers. SABRAO J Breed Genet. 2019;51(3).
- Du J-K, Yao Y-Y, Ni Z-F, Peng H, Sun Q. Genetic diversity revealed by ISSR molecular marker in common wheat, spelt, compactum and progeny of recurrent selection. Yi chuan xue bao= Acta genetica Sinica. 2002;29(5):445-52.
- El Rabey HA, Khan JA, Abuinaja KO, Al Malki AL. Molecular characterization of barley (Hordeum vulgare L.) genome for drought tolerant cultivars selection. Afr J Biotechnol. 2012;11(40):9527-33.
- Amiri E, Farshadfar E, Jowkar MM. AMMI analysis of wheat substitution lines for detecting genes controlling adaptability. Int J Adv Biol Biomed Res. 2013;1:1112-23.
- Farshadfar E, Haghparast R, Qaitoli M. Chromosomal localization of the genes controlling agronomic and physiological indicators of drought tolerance in barley using disomic addition lines. Asian J Plant Sci. 2008;7(6):536-43.
- Koeszegi B, Farshadfar E, Vagujfalvi A, Sutka J. Drought tolerance studies on wheat/rye disomic chromosome addition lines. Acta Agronomica Hungarica. 1996;44:121-6.
References
Ellis RP, Forster BP, Robinson D, Handley L, Gordon DC, Russell JR, et al. Wild barley: a source of genes for crop improvement in the 21st century? J Exp Bot. 2000;51(342):9-17.
Guo P, Baum M, Grando S, Ceccarelli S, Bai G, Li R, et al. Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage. J exp bot. 2009;60(12):3531-44.
Molnár-Láng M, Linc G, Szakács í‰. Wheat–barley hybridization: the last 40 years. Euphytica. 2014;195(3):315-29.
Akladious S, Abbas S. Inter simple sequence repeat (ISSR) markers and some physiological attributes of barley (Hordeum Vulgare L.) genotypes to drought and potassium nutrition. J Anim Plant Sci. 2014;24:620-33.
Bilgic H, Cho S, Garvin DF, Muehlbauer GJ. Mapping barley genes to chromosome arms by transcript profiling of wheat–barley ditelosomic chromosome addition lines. Genome. 2007;50(10):898-906.
Molnár-Láng M, Kruppa K, Cseh A, Bucsi J, Linc G. Identification and phenotypic description of new wheat–six-rowed winter barley disomic additions. Genome. 2012;55(4):302-11.
Kruse A. Hordeumí— Triticum hybrids. Hereditas. 1973;73(1):157-61.
Fedak G, Jui PY. Chromosomes of Chinese Spring wheat carrying genes for crossability with Betzes barley. Can J Genet Cytol. 1982;24(2):227-33.
Islam A, Shepherd K, Sparrow D, editors. Addition of individual barley chromosomes to wheat. Proceedings of the International Barley Genetics Symposium; 1976.
Szakács í‰, Molnár-Láng M. Identification of new winter wheat–winter barley addition lines (6HS and 7H) using fluorescence in situ hybridization and the stability of the whole ‘Martonvásári 9 kr1'–‘Igri'addition set. Genome. 2010;53(1):35-44.
Szakács í‰, Molnár-Láng M. Development and molecular cytogenetic identification of new winter wheat–winter barley (‘Martonvásári 9 kr1'–‘Igri') disomic addition lines. Genome. 2006;50(1):43-50.
Cseh A, Kruppa K, Molnár I, Rakszegi M, Doležel J, Molnár-Láng M. Characterization of a new 4BS. 7HL wheat–barley translocation line using GISH, FISH, and SSR markers and its effect on the β-glucan content of wheat. Genome. 2011;54(10):795-804.
Araus JL, Slafer GA, Royo C, Serret MD. Breeding for yield potential and stress adaptation in cereals. Critical Rev Plant Sci. 2008;27(6):377-412.
Araus J, Bort J, Steduto P, Villegas D, Royo C. Breeding cereals for Mediterranean conditions: ecophysiological clues for biotechnology application. Annals of Appl Biol. 2003;142(2):129-41.
Singh R, Mishra GP, Thakur AK, Singh SB. Molecular markers in plants. Molecular plant breeding: principle, method and application Studium Press LLC, Houston. 2008:35-78.
Li G, McVetty PB, Quiros CF, Andersen S. SRAP molecular marker technology in plant science. Plant breeding from laboratories to fields. 2013:23-43.
Hu T, Li H, Li D, Sun J, Fu J. Assessing genetic diversity of perennial ryegrass (Lolium perenne L.) from four continents by intersimple sequence repeat (ISSR) markers. Afr J Biotechnol. 2011;10(83):19365-74.
Xia Y, Li R, Bai G, Siddique KH, Varshney RK, Baum M, et al. Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.). Scientific reports. 2017;7(1):1-10.
Liu X, Fan Y, Mak M, Babla M, Holford P, Wang F, et al. QTLs for stomatal and photosynthetic traits related to salinity tolerance in barley. BMC genomics. 2017;18(1):9.
Wójcik-JagÅ‚a M, Fiust A, KoÅ›cielniak J, Rapacz M. Association mapping of drought tolerance-related traits in barley to complement a traditional biparental QTL mapping study. Theo appl genet. 2018;131(1):167-81.
Guasmi F, Touil L, Feres K, Elfelah W, Triki T, Ferchichi A. Genetic diversity of Tunisian barley accessions based on microsatellite markers. Biotechnology. 2008;7(4):781-6.
Allel D, Ben-Amar A, Lamine M, Abdelly C. Relationships and genetic structure of North African barley (Hordeum vulgare L.) germplasm revealed by morphological and molecular markers: Biogeographical considerations. South Afr J Bot. 2017;112:1-10.
Dbira S, Al Hassan M, Gramazio P, Ferchichi A, Vicente O, Prohens J, et al. Variable levels of tolerance to water stress (drought) and associated biochemical markers in Tunisian barley landraces. Molecules. 2018;23(3):613.
Levan A, Fredga K, Sandberg AA. Nomenclature for centromeric position on chromosomes. Hereditas. 1964;52(2):201-20.
Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. 1987.
Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, et al. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Molecular breeding. 1996;2(3):225-38.
Benech Arnold R, Fenner M, Edwards P. Changes in germinability, ABA content and ABA embryonic sensitivity in developing seeds of Sorghum bicolor (L.) Moench. induced by water stress during grain filling. New Phytologist. 1991;118(2):339-47.
Orchard T. Estimating the parameters of plant seedling emergence. Seed sci technol. 1977.
Esechie H. Interaction of salinity and temperature on the germination of sorghum. Journal of Agro Crop Sci. 1994;172(3):194-9.
Kader M. A comparison of seed germination calculation formulae and the associated interpretation of resulting data. J Proceed of the Royal Society of New South Wales. 2005;138:65-75.
Ranal MA, Santana DGd. How and why to measure the germination process? Brazilian J Bot. 2006;29(1):1-11.
Tjio JH, Hagberg A. Cytological studies on some X-ray mutants of barley. 1951.
Abou-Deif M, Rashed M, Sallam M, Mostafa E, Ramadan W. Characterization of twenty wheat varieties by ISSR markers. Middle-East J Sci Res. 2013;15(2):168-75.
AL-Tamimi AJ, AL-Janabi A. Genetic diversity among bread wheat genotypes using RAPD and SSR markers. SABRAO J Breed Genet. 2019;51(3).
Du J-K, Yao Y-Y, Ni Z-F, Peng H, Sun Q. Genetic diversity revealed by ISSR molecular marker in common wheat, spelt, compactum and progeny of recurrent selection. Yi chuan xue bao= Acta genetica Sinica. 2002;29(5):445-52.
El Rabey HA, Khan JA, Abuinaja KO, Al Malki AL. Molecular characterization of barley (Hordeum vulgare L.) genome for drought tolerant cultivars selection. Afr J Biotechnol. 2012;11(40):9527-33.
Amiri E, Farshadfar E, Jowkar MM. AMMI analysis of wheat substitution lines for detecting genes controlling adaptability. Int J Adv Biol Biomed Res. 2013;1:1112-23.
Farshadfar E, Haghparast R, Qaitoli M. Chromosomal localization of the genes controlling agronomic and physiological indicators of drought tolerance in barley using disomic addition lines. Asian J Plant Sci. 2008;7(6):536-43.
Koeszegi B, Farshadfar E, Vagujfalvi A, Sutka J. Drought tolerance studies on wheat/rye disomic chromosome addition lines. Acta Agronomica Hungarica. 1996;44:121-6.