Issue
Protein molecular defect detection method based on a neural network algorithm
Corresponding Author(s) : Meiqing Zheng
Cellular and Molecular Biology,
Vol. 66 No. 7: Issue 7
Abstract
Keywords
Download Citation
Endnote/Zotero/Mendeley (RIS)BibTeX
- Mondal S, Mukherjee S, Bagchi B. Origin of diverse time scales in the protein hydration layer solvation dynamics: A simulation study. J Chem Physic 2017; 147(15): 154901.
- Aghazadeh R, Zamani M, Motallebi M, Moradyar M. Agrobacterium-Mediated Transformation of the Oryza sativa Thaumatin-Like Protein to Canola (R Line Hyola308) for Enhancing Resistance to Sclerotinia sclerotiorum. Iran J Biotechnol. 2017; 15(3): 201-207.
- Barkhordari F, Raigani M, Garoosi YT, Mahboudi F, Davami F. Optimization of EnBase Fed-Batch Cultivation to Improve Soluble Fraction Ratio of α-Luffin Ribosome Inactivating Protein. Iran J Biotechnol. 2018; 16(1): e1482.
- Chen B, Jia Y, Xiong J, Chen L, Luo M, Cheng W, Wang Y, Liu F, Ma S. Effect of Pressure Stresses on Cell Viability and Protein Expression of Fascial Fibroblast. Iran J Biotechnol. 2019; 17(1): e1863.
- Chen C, Kang C, Rong N, Wu N, Chen C, Wu S, Zhang X, Liu X. Evaluation of Immunogenicity, Protective Immunity on Aquaculture Pathogenic Vibrio and Fermentation of Vibrio alginolyticus Flagellin FlaC Protein. Iran J Biotechnol. 2019; 17(3): e2628.
- Feizollahzadeh S, Kouhpayeh S, Rahimmansh I, Khanahmad H, Sabzehei F, Ganjalikhani-Hakemi M, Andalib A, Hejazi Z, Rezaei A. The Increase in Protein and Plasmid Yields of E. coli with Optimized Concentration of Ampicillin as Selection Marker. Iran J Biotechnol. 2017; 15(2): 128-134.
- Hoseini ASH, Mirzarezaee M. Prediction of Protein Sub-Mitochondria Locations Using Protein Interaction Networks. Iran J Biotechnol. 2018; 16(3): e1933.
- Jia H, Li H, Zhang L, Xu D. Development of a Novel Gene Expression System for Secretory Production of Heterologous Proteins via the General Secretory (Sec) Pathway in Corynebacterium Glutamicum. Iran J Biotechnol. 2018; 16(1): e1746.
- Khoshtinat Nikkhoi S, Dorostkar R, Ranjbar S, Heydarzadeh H, Tat M, Ghalavand M, Farasat A, Hashemzadeh MS. Synergistic Effect of Expressed miR-128 and Puma Protein on Targeted Induction of Tumor Cell Apoptosis. Iran J Biotechnol. 2016; 14(3): 185-191.
- Liao Z, Liu H, Liu J, Cai M, Chen T, Hong Q, Luo X, Li X, Ding X, Shen H, Chen D. Heat Shock Protein 60: Identification of an Undetected Allergen from Dermatophagoides farinae. Iran J Biotechnol. 2018; 16(3): e1697.
- Mohammadi S, Nikkhah M. TiO2 Nanoparticles as Potential Promoting Agents of Fibrillation of α-Synuclein, a Parkinson's Disease-Related Protein. Iran J Biotechnol. 2017; 15(2): 87-94.
- Mirnurollahi SM, Bolhassani A, Irani S, Davoudi N. Expression and Purification of HCV Core and Core-E1E2 Proteins in Different Bacterial Strains. Iran J Biotechnol. 2015; 13(3): 57-62.
- Motamedi MJ, Shahsavandi S, Amani J, Kazemi R, Takrim S, Jafari M, Salmanian AH. Immunogenicity of the Multi-Epitopic Recombinant Glycoproteins of Newcastle Disease Virus: Implications for the Serodiagnosis Applications. Iran J Biotechnol. 2018; 16(4): e1749.
- Sahmani M, Azari S, Tebianian M, Gheibi N, Pourasgari F. Higher Expression Level and Lower Toxicity of Genetically Spliced Rotavirus NSP4 in Comparison to the Full-Length Protein in E. coli. Iran J Biotechnol. 2016; 14(2): 50-57.
- Savardashtaki A, Sharifi Z, Hamzehlou S, Farajollahi MM. Analysis of Immumoreactivity of Heterologously Expressed Non-structural Protein 4B (NS4B) from Hepatitis C Virus (HCV) Genotype 1a. Iran J Biotechnol. 2015; 13(4): 32-37.
- Seyfi Abad Shapouri MR, Mahmoodi P, Gharibi D, Ghorbanpoor M, Yaghoubi S, Rezaei E, Rashno M, Mehravar N. Molecular Cloning, Expression and Peroxidase Conjugation of Staphylococcus aureus Protein A. Iran J Biotechnol. 2016; 14(4): 230-235.
- Chen K., Song X, Liao, Z. A method for calculating the delay bound of 1553B bus by network calculus. J China Acad Electro Info Technol 2019; 2: 129-133.
- Morinaka BI, Lakis E, Verest M, Helf MJ, Scalvenzi T, Vagstad AL, Sims J, Sunagawa S, Gugger M, Piel J. Natural noncanonical protein splicing yields products with diverse β-amino acid residues. Science 2018; 359(6377): 779-82.
- Han J, Han J, Huang H. Research on hybrid cascaded multi-level converter with floating capacitor. J Power Suppl 2018; 16: 71-76.
- Timr S, Kadlec J, Srb P, Ollila OS, Jungwirth P. Calcium sensing by recoverin: effect of protein conformation on ion affinity. J Phys Chem Let 2018; 9: 13-1619.
- Zhao G, He M, Tang G. Research on re-usage evaluation method of retired lithium-ion power batteries. Chin J Power Sourc 2018; 11: 1632-1634.
- Borodinova A, Zuzina P, Balaban M. Typical protein kinases in maintenance of long-term memory and synaptic plasticity. Biochem (Moscow), 2017; 82: 243-256.
- Song L. Research on the development strategy of Intelligent Tourism Based on Internet. Automation Instrumentation 2018; 1: 37-39.
- Ukuwela AA, Bush AI, Wedd AG, Xiao Z. Glutaredoxins employ parallel monothiol–dithiol mechanisms to catalyze thiol–disulfide exchanges with protein disulfides. Chem Sci 2018; 9(5): 1173-83.
- Zhan D, Wang R, Min W. Characterization of enzymatic properties of mutant P184Q of aspartate kinase from corynebacterium pekinense. J Jilin University (Science Edition), 2017: 55: 1614-1620.
- Lu X, Wang C, Li X, Zhao J. Temperature and pH influence adsorption of cellobiohydrolase onto lignin by changing the protein properties. Biores Technol 2017; 245: 819-825.
- Zhu G, Zhu T, Hong X. Simulation of uniform mixing optimization for sludge agitator. Computer Simulation, 2017; 12: 411-414.
- Anda A, De Vico L, Hansen T. Intermolecular modes between LH2 bacteriochlorophylls and protein residues: The effect on the excitation energies. J Physic Chem B. 2017; 121(22): 5499-4508.
- Zhang R, Tao J. A nonlinear fuzzy neural network modeling approach using an improved genetic algorithm. IEEE Transact Indust Electron 2017; 65(7): 5882-5892.
- Dora S, Sundaram S, Sundararajan N. An interclass margin maximization learning algorithm for evolving spiking neural network. IEEE Transact Cybernetic 2018; 49(3): 989-999.
- Faris H, Aljarah I, Mirjalili S. Improved monarch butterfly optimization for unconstrained global search and neural network training. Appl Intelligence. 2018; 48(2): 445-64.
- Vamvoudakis KG, Miranda MF, Hespanha JP. Asymptotically stable adaptive–optimal control algorithm with saturating actuators and relaxed persistence of excitation. IEEE Transact Neural Networks Learning Sys 2015; 27(11): 2386-98.
- Rahman MZ, Ahmed MS. Flag identification using support vector machine. JU Journal of Information Technology (JIT). 2013 Jun; 2:11-6.
- Ahmed K, Jesmin T. Comparative Analysis of Data Mining Classification Algorithms in Type-2 Diabetes Prediction Data Using WEKA Approach. International Journal of Science and Engineering. 2014 Oct;7(2):155-60.
- Billah M, Waheed S, Ahmed K, Hanifa A. Real time traffic sign detection and recognition using adaptive neuro fuzzy inference system. work. 2015 Oct; 3(1):1-5.
- Yu J, Wu Z, Wang M, Tan M. CPG network optimization for a biomimetic robotic fish via PSO. IEEE Transact Neural Networks Learning Sys 2015; 27(9):1962-1968.
- Ahmed, K., Al-Emran, A., Jesmin, T., Mukti, R. F., Rahman, M. Z., & Ahmed, F. Early detection of lung cancer risk using data mining. Asian Pacific Journal of Cancer Prevention. 2013; 14(1): 595-598.
- Ahmed K, Jesmin T, Rahman MZ. Early prevention and detection of skin cancer risk using data mining. International Journal of Computer Applications. 2013; 62(4): 1-6.
- Fontenla-Romero O, Pérez-Sánchez B, Guijarro-Berdiñas B. LANN-SVD: a non-iterative SVD-based learning algorithm for one-layer neural networks. IEEE Transact Neural Networks Learning Sys 2017; 29(8): 3900-5.
- Jung HY, Heo YS. Fingerprint liveness map construction using convolutional neural network. Electron Lett 2018; 54(9): 564-566.
- Akkurt I, Gunoglu K, Tekin H, Demirci Z, Yegin G, Demir D. Estimation of bremsstrahlung photon fluence from aluminum by artificial neural network. Int J Radiat Res. 2012; 10 (1) :63-65.
- Abdolmaleki P, Abrishami-Moghddam H, Gity M, Mokhtari-Dizaji M, Mostafa A. Improving the performance of neural network in differentiation of breast tumors using wavelet transformation on dynamic MRI. Int J Radiat Res. 2005; 3 (3) :135-142.
- Karbalaie K, Vallian S, Lachinani L, Tanhaei S, Baharvand H, Nasr-Esfahani MH. Analysis of Promyelocytic Leukemia in Human Embryonic Carcinoma Stem Cells During Retinoic Acid-Induced Neural Differentiation. Iran J Biotechnol 2016; 14(3): 169-176.
- Abdolmaleki P, Yarmohammadi M, Gity M. Comparison of logistic regression and neural network models in predicting the outcome of biopsy in breast cancer from MRI findings. Int J Radiat Res. 2004; 1 (4) :217-228.
References
Mondal S, Mukherjee S, Bagchi B. Origin of diverse time scales in the protein hydration layer solvation dynamics: A simulation study. J Chem Physic 2017; 147(15): 154901.
Aghazadeh R, Zamani M, Motallebi M, Moradyar M. Agrobacterium-Mediated Transformation of the Oryza sativa Thaumatin-Like Protein to Canola (R Line Hyola308) for Enhancing Resistance to Sclerotinia sclerotiorum. Iran J Biotechnol. 2017; 15(3): 201-207.
Barkhordari F, Raigani M, Garoosi YT, Mahboudi F, Davami F. Optimization of EnBase Fed-Batch Cultivation to Improve Soluble Fraction Ratio of α-Luffin Ribosome Inactivating Protein. Iran J Biotechnol. 2018; 16(1): e1482.
Chen B, Jia Y, Xiong J, Chen L, Luo M, Cheng W, Wang Y, Liu F, Ma S. Effect of Pressure Stresses on Cell Viability and Protein Expression of Fascial Fibroblast. Iran J Biotechnol. 2019; 17(1): e1863.
Chen C, Kang C, Rong N, Wu N, Chen C, Wu S, Zhang X, Liu X. Evaluation of Immunogenicity, Protective Immunity on Aquaculture Pathogenic Vibrio and Fermentation of Vibrio alginolyticus Flagellin FlaC Protein. Iran J Biotechnol. 2019; 17(3): e2628.
Feizollahzadeh S, Kouhpayeh S, Rahimmansh I, Khanahmad H, Sabzehei F, Ganjalikhani-Hakemi M, Andalib A, Hejazi Z, Rezaei A. The Increase in Protein and Plasmid Yields of E. coli with Optimized Concentration of Ampicillin as Selection Marker. Iran J Biotechnol. 2017; 15(2): 128-134.
Hoseini ASH, Mirzarezaee M. Prediction of Protein Sub-Mitochondria Locations Using Protein Interaction Networks. Iran J Biotechnol. 2018; 16(3): e1933.
Jia H, Li H, Zhang L, Xu D. Development of a Novel Gene Expression System for Secretory Production of Heterologous Proteins via the General Secretory (Sec) Pathway in Corynebacterium Glutamicum. Iran J Biotechnol. 2018; 16(1): e1746.
Khoshtinat Nikkhoi S, Dorostkar R, Ranjbar S, Heydarzadeh H, Tat M, Ghalavand M, Farasat A, Hashemzadeh MS. Synergistic Effect of Expressed miR-128 and Puma Protein on Targeted Induction of Tumor Cell Apoptosis. Iran J Biotechnol. 2016; 14(3): 185-191.
Liao Z, Liu H, Liu J, Cai M, Chen T, Hong Q, Luo X, Li X, Ding X, Shen H, Chen D. Heat Shock Protein 60: Identification of an Undetected Allergen from Dermatophagoides farinae. Iran J Biotechnol. 2018; 16(3): e1697.
Mohammadi S, Nikkhah M. TiO2 Nanoparticles as Potential Promoting Agents of Fibrillation of α-Synuclein, a Parkinson's Disease-Related Protein. Iran J Biotechnol. 2017; 15(2): 87-94.
Mirnurollahi SM, Bolhassani A, Irani S, Davoudi N. Expression and Purification of HCV Core and Core-E1E2 Proteins in Different Bacterial Strains. Iran J Biotechnol. 2015; 13(3): 57-62.
Motamedi MJ, Shahsavandi S, Amani J, Kazemi R, Takrim S, Jafari M, Salmanian AH. Immunogenicity of the Multi-Epitopic Recombinant Glycoproteins of Newcastle Disease Virus: Implications for the Serodiagnosis Applications. Iran J Biotechnol. 2018; 16(4): e1749.
Sahmani M, Azari S, Tebianian M, Gheibi N, Pourasgari F. Higher Expression Level and Lower Toxicity of Genetically Spliced Rotavirus NSP4 in Comparison to the Full-Length Protein in E. coli. Iran J Biotechnol. 2016; 14(2): 50-57.
Savardashtaki A, Sharifi Z, Hamzehlou S, Farajollahi MM. Analysis of Immumoreactivity of Heterologously Expressed Non-structural Protein 4B (NS4B) from Hepatitis C Virus (HCV) Genotype 1a. Iran J Biotechnol. 2015; 13(4): 32-37.
Seyfi Abad Shapouri MR, Mahmoodi P, Gharibi D, Ghorbanpoor M, Yaghoubi S, Rezaei E, Rashno M, Mehravar N. Molecular Cloning, Expression and Peroxidase Conjugation of Staphylococcus aureus Protein A. Iran J Biotechnol. 2016; 14(4): 230-235.
Chen K., Song X, Liao, Z. A method for calculating the delay bound of 1553B bus by network calculus. J China Acad Electro Info Technol 2019; 2: 129-133.
Morinaka BI, Lakis E, Verest M, Helf MJ, Scalvenzi T, Vagstad AL, Sims J, Sunagawa S, Gugger M, Piel J. Natural noncanonical protein splicing yields products with diverse β-amino acid residues. Science 2018; 359(6377): 779-82.
Han J, Han J, Huang H. Research on hybrid cascaded multi-level converter with floating capacitor. J Power Suppl 2018; 16: 71-76.
Timr S, Kadlec J, Srb P, Ollila OS, Jungwirth P. Calcium sensing by recoverin: effect of protein conformation on ion affinity. J Phys Chem Let 2018; 9: 13-1619.
Zhao G, He M, Tang G. Research on re-usage evaluation method of retired lithium-ion power batteries. Chin J Power Sourc 2018; 11: 1632-1634.
Borodinova A, Zuzina P, Balaban M. Typical protein kinases in maintenance of long-term memory and synaptic plasticity. Biochem (Moscow), 2017; 82: 243-256.
Song L. Research on the development strategy of Intelligent Tourism Based on Internet. Automation Instrumentation 2018; 1: 37-39.
Ukuwela AA, Bush AI, Wedd AG, Xiao Z. Glutaredoxins employ parallel monothiol–dithiol mechanisms to catalyze thiol–disulfide exchanges with protein disulfides. Chem Sci 2018; 9(5): 1173-83.
Zhan D, Wang R, Min W. Characterization of enzymatic properties of mutant P184Q of aspartate kinase from corynebacterium pekinense. J Jilin University (Science Edition), 2017: 55: 1614-1620.
Lu X, Wang C, Li X, Zhao J. Temperature and pH influence adsorption of cellobiohydrolase onto lignin by changing the protein properties. Biores Technol 2017; 245: 819-825.
Zhu G, Zhu T, Hong X. Simulation of uniform mixing optimization for sludge agitator. Computer Simulation, 2017; 12: 411-414.
Anda A, De Vico L, Hansen T. Intermolecular modes between LH2 bacteriochlorophylls and protein residues: The effect on the excitation energies. J Physic Chem B. 2017; 121(22): 5499-4508.
Zhang R, Tao J. A nonlinear fuzzy neural network modeling approach using an improved genetic algorithm. IEEE Transact Indust Electron 2017; 65(7): 5882-5892.
Dora S, Sundaram S, Sundararajan N. An interclass margin maximization learning algorithm for evolving spiking neural network. IEEE Transact Cybernetic 2018; 49(3): 989-999.
Faris H, Aljarah I, Mirjalili S. Improved monarch butterfly optimization for unconstrained global search and neural network training. Appl Intelligence. 2018; 48(2): 445-64.
Vamvoudakis KG, Miranda MF, Hespanha JP. Asymptotically stable adaptive–optimal control algorithm with saturating actuators and relaxed persistence of excitation. IEEE Transact Neural Networks Learning Sys 2015; 27(11): 2386-98.
Rahman MZ, Ahmed MS. Flag identification using support vector machine. JU Journal of Information Technology (JIT). 2013 Jun; 2:11-6.
Ahmed K, Jesmin T. Comparative Analysis of Data Mining Classification Algorithms in Type-2 Diabetes Prediction Data Using WEKA Approach. International Journal of Science and Engineering. 2014 Oct;7(2):155-60.
Billah M, Waheed S, Ahmed K, Hanifa A. Real time traffic sign detection and recognition using adaptive neuro fuzzy inference system. work. 2015 Oct; 3(1):1-5.
Yu J, Wu Z, Wang M, Tan M. CPG network optimization for a biomimetic robotic fish via PSO. IEEE Transact Neural Networks Learning Sys 2015; 27(9):1962-1968.
Ahmed, K., Al-Emran, A., Jesmin, T., Mukti, R. F., Rahman, M. Z., & Ahmed, F. Early detection of lung cancer risk using data mining. Asian Pacific Journal of Cancer Prevention. 2013; 14(1): 595-598.
Ahmed K, Jesmin T, Rahman MZ. Early prevention and detection of skin cancer risk using data mining. International Journal of Computer Applications. 2013; 62(4): 1-6.
Fontenla-Romero O, Pérez-Sánchez B, Guijarro-Berdiñas B. LANN-SVD: a non-iterative SVD-based learning algorithm for one-layer neural networks. IEEE Transact Neural Networks Learning Sys 2017; 29(8): 3900-5.
Jung HY, Heo YS. Fingerprint liveness map construction using convolutional neural network. Electron Lett 2018; 54(9): 564-566.
Akkurt I, Gunoglu K, Tekin H, Demirci Z, Yegin G, Demir D. Estimation of bremsstrahlung photon fluence from aluminum by artificial neural network. Int J Radiat Res. 2012; 10 (1) :63-65.
Abdolmaleki P, Abrishami-Moghddam H, Gity M, Mokhtari-Dizaji M, Mostafa A. Improving the performance of neural network in differentiation of breast tumors using wavelet transformation on dynamic MRI. Int J Radiat Res. 2005; 3 (3) :135-142.
Karbalaie K, Vallian S, Lachinani L, Tanhaei S, Baharvand H, Nasr-Esfahani MH. Analysis of Promyelocytic Leukemia in Human Embryonic Carcinoma Stem Cells During Retinoic Acid-Induced Neural Differentiation. Iran J Biotechnol 2016; 14(3): 169-176.
Abdolmaleki P, Yarmohammadi M, Gity M. Comparison of logistic regression and neural network models in predicting the outcome of biopsy in breast cancer from MRI findings. Int J Radiat Res. 2004; 1 (4) :217-228.